High throughput parallel-i/o using sionlib for mesoscopic particle dynamics simulations on massively parallel computers
J. Freche, W. Frings, G. Sutmann.
Parallel Computing: From Multicores and GPU's to Petascale, 19, 371-378, (2010)
The newly developed parallel Input/Output-libray SIONlib is applied to the highly scalable parallel multiscale code MP2C, which couples a mesoscopic fluid method based on multi-particle collision dynamics to molecular dynamics. It is demonstrated that for fluid-benchmark systems, a significant improvement of scalability under production conditions can be achieved. It is shown that for the BlueGene/P architecture at Jülich a performance close to the bandwidth capacity of 4.7 GByte/sec can be obtained. The article discusses the ease of use of SIONlib from the point of view of application.
DOI: DOI: 10.3233/978-1-60750-530-3-371