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Electron backscatter diffraction is one of the most prevalent techniques used for microstructural characterization. In recent years, there has been an increase in the use of data-driven methods to analyze raw Kikuchi patterns. However, most of these require user input and the interpretation of the data-derived features is often challenging and subject to informed interpretation. By using a combination of principal component analysis, constrained nonnegative matrix factorization, and a variational autoencoder along with information-theoretical considerations on a multimodal dataset, it is shown that a) automated decision on method-specific hyperparameters, here the number of components in principal component analysis, the number of components for constrained nonnegative matrix factorization, and the selection of reference constraints and b) latent space features can be mapped to physically meaningful quantities. In addition, the recommended region-of-interest size for optimal model performance is approximated automatically to be twice the characteristic grain size based on information content of the dataset. Implemented in a workflow, this allows for a transferable, dataset-specific autonomous data-driven phase and grain segmentation including grain boundary detection and the analysis of very-small-angle intra-grain variations to complement conventional electron backscatter analysis.